LSAMP, chr3:115521235-117716095 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9820027 chr3:116511825 LSAMP All: C 7,520 8 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.86-0.98) 0 (0-49) 0.013
Meta_image?name=rs9820027

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9820027 chr3:116511825 LSAMP All: C 7,520 8 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.86-0.98) 0 (0-49) 0.013
rs9856549 chr3:115680799 LSAMP All: C 7,520 8 A vs. G 0.192 (A) 0.125 (A) 0.90 (0.84-0.98) 0 (0-64) 0.013
rs2868975 chr3:116935323 LSAMP All: C 7,520 8 A vs. G 0.242 (A) 0.2 (A) 1.11 (1.02-1.21) 0 (0-50) 0.014
rs9824605 chr3:115756854 LSAMP All: C 7,520 8 G vs. A 0.158 (G) 0.125 (G) 0.90 (0.82-0.98) 30 (0-69) 0.016
rs1513156 chr3:117066621 LSAMP All: C 7,520 8 C vs. T 0.167 (C) 0.358 (T) 0.91 (0.83-0.99) 6 (0-70) 0.028
rs3849471 chr3:117000128 LSAMP All: C 7,520 8 T vs. C 0.442 (T) 0.058 (C) 1.07 (1.01-1.15) 0 (0-24) 0.035
rs1513168 chr3:117004940 LSAMP All: C 7,520 8 C vs. T 0.158 (C) 0.267 (T) >1 (-) 35 (-) <0.05
rs938111 chr3:116847881 LSAMP All: C 14,948 8 G vs. T 0.133 (G) 0.483 (T) 1.11 (1.00-1.22) 21 (0-63) 0.045
rs6800555 chr3:117045006 LSAMP All: C 7,520 8 T vs. C 0.167 (T) 0.367 (C) 0.91 (0.83-1.00) 9 (0-70) 0.046
rs2045307 chr3:117638220 LSAMP All: C 7,520 8 G vs. A 0.275 (C) 0.392 (C) <1 (-) 0 (-) <0.05
rs9289038 chr3:115746815 LSAMP All: C 7,520 8 G vs. T 0.233 (G) 0.1 (G) 1.09 (1.00-1.18) 0 (0-11) 0.046
rs938170 chr3:116973407 LSAMP All: C 7,520 8 T vs. C 0.05 (T) 0.1 (T) >1 (-) 45 (-) <0.05
rs1554328 chr3:116842805 LSAMP All: C 7,520 8 T vs. C 0.1 (T) 0.467 (T) 1.11 (1.00-1.24) 0 (0-66) 0.047
rs938115 chr3:116775273 LSAMP All: C 7,520 8 A vs. G 0.383 (T) 0.233 (T) <1 (-) 13 (-) <0.05
rs6771286 chr3:116327808 LSAMP All: C 7,520 8 G vs. A 0.117 (G) 0.158 (G) <1 (-) 37 (-) >0.05
rs3900989 chr3:116970252 LSAMP All: C 7,520 8 G vs. A 0.458 (C) 0.058 (C) <1 (-) 35 (-) >0.05
rs1350985 chr3:116949619 LSAMP All: C 7,520 8 G vs. A 0.183 (C) 0.308 (T) >1 (-) 26 (-) >0.05
rs868114 chr3:116900418 LSAMP All: C 7,520 8 T vs. C 0.358 (T) 0.375 (C) >1 (-) 62 (-) >0.05
rs7628605 chr3:115540633 LSAMP All: C 7,520 8 G vs. A 0.05 (G) - <1 (-) 0 (-) >0.05
rs938523 chr3:115522776 LSAMP All: C 7,520 8 G vs. A 0.25 (C) 0.167 (C) <1 (-) 56 (-) >0.05
rs861000 chr3:117709090 LSAMP All: C 7,520 8 A vs. G 0.158 (A) - >1 (-) 13 (-) >0.05
rs1347059 chr3:116452273 LSAMP All: C 7,520 8 C vs. T 0.05 (C) 0.408 (C) >1 (-) 33 (-) >0.05
rs1920196 chr3:116180804 LSAMP All: C 7,520 8 G vs. A 0.067 (C) 0.142 (C) >1 (-) 48 (-) >0.05
rs1991745 chr3:116508847 LSAMP All: C 7,520 8 A vs. G 0.1 (A) 0.175 (A) 0.92 (0.84-1.01) 32 (0-70) 0.086
rs2222827 chr3:115818342 LSAMP All: C 7,520 8 C vs. T 0.217 (G) 0.117 (G) <1 (-) 54 (-) >0.05
rs4240161 chr3:115654420 LSAMP All: C 7,520 8 A vs. G 0.458 (A) 0.2 (A) <1 (-) 0 (-) >0.05
rs17697123 chr3:115675327 LSAMP All: C 7,520 8 C vs. T 0.233 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs6785331 chr3:116507625 LSAMP All: C 7,520 8 C vs. A 0.367 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs6438403 chr3:117429565 LSAMP All: C 7,520 8 G vs. T 0.167 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs4855928 chr3:116898326 LSAMP All: C 7,520 8 G vs. T 0.442 (T) 0.383 (G) <1 (-) 12 (-) >0.05
rs1157392 chr3:116514916 LSAMP All: C 7,520 8 G vs. T 0.083 (C) - <1 (-) 0 (-) >0.05
rs4401357 chr3:115721098 LSAMP All: C 7,520 8 A vs. G 0.242 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs6438422 chr3:117558654 LSAMP All: C 7,520 8 T vs. C 0.042 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs9845897 chr3:117521124 LSAMP All: C 7,520 8 C vs. T 0.217 (C) 0.092 (C) >1 (-) 26 (-) >0.05
rs4687889 chr3:117537438 LSAMP All: C 7,520 8 C vs. T 0.45 (C) 0.125 (C) >1 (-) 0 (-) >0.05
rs4616651 chr3:117239882 LSAMP All: C 7,520 8 C vs. T 0.492 (C) 0.233 (T) <1 (-) 0 (-) >0.05
rs1456196 chr3:117654552 LSAMP All: C 7,520 8 T vs. G 0.242 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs1996490 chr3:116311890 LSAMP All: C 7,520 8 A vs. G 0.475 (A) 0.433 (G) >1 (-) 34 (-) >0.05
rs13090380 chr3:116507762 LSAMP All: C 7,520 8 A vs. G 0.35 (A) 0.375 (G) <1 (-) 5 (-) >0.05
rs7433883 chr3:117563472 LSAMP All: C 7,520 8 A vs. C 0.225 (A) 0.083 (A) >1 (-) 29 (-) >0.05
rs11718284 chr3:117220938 LSAMP All: C 7,520 8 T vs. C 0.067 (T) - <1 (-) 0 (-) >0.05
rs1462843 chr3:116946253 LSAMP All: C 7,520 8 C vs. T 0.483 (C) 0.083 (C) 0.96 (0.90-1.02) 12 (0-71) 0.191
rs2918240 chr3:115479262 GAP43 [+38925bp] All: C 7,520 8 T vs. C 0.092 (A) 0.025 (A) <1 (-) 6 (-) >0.05
rs6801567 chr3:117072093 LSAMP All: C 7,520 8 A vs. C 0.133 (A) 0.325 (C) <1 (-) 0 (-) >0.05
rs2605532 chr3:117698799 LSAMP All: C 7,520 8 C vs. T 0.158 (C) - >1 (-) 9 (-) >0.05
rs1402625 chr3:116795941 LSAMP All: C 7,520 8 T vs. C 0.092 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs9810432 chr3:116827966 LSAMP All: C 7,520 8 T vs. C 0.425 (C) 0.367 (C) <1 (-) 52 (-) >0.05
rs13094218 chr3:117094803 LSAMP All: C 7,520 8 A vs. G 0.15 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs1915585 chr3:116908831 LSAMP All: C 7,520 8 A vs. C 0.142 (T) - >1 (-) 28 (-) >0.05
rs10934348 chr3:116229235 LSAMP All: C 7,520 8 A vs. G 0.425 (A) 0.375 (G) >1 (-) 18 (-) >0.05

Association studies for this region [+]